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CAMP: a modular metagenomics analysis system for integrated multistep data exploration
Mak, Lauren Tierney, Braden Wei, Wei Ronkowski, Cynthia Toscan, Rodolfo Brizola Turhan, Berk Toomey, Michael Andrade-Martínez, Juan Sebastian Fu, Chenlian Lucaci, Alexander G
Mak, Lauren
Tierney, Braden
Wei, Wei
Ronkowski, Cynthia
Toscan, Rodolfo Brizola
Turhan, Berk
Toomey, Michael
Andrade-Martínez, Juan Sebastian
Fu, Chenlian
Lucaci, Alexander G
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lqaf172.pdf
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Author
Mak, Lauren
Tierney, Braden
Wei, Wei
Ronkowski, Cynthia
Toscan, Rodolfo Brizola
Turhan, Berk
Toomey, Michael
Andrade-Martínez, Juan Sebastian
Fu, Chenlian
Lucaci, Alexander G
Solano, Arthur Henrique Barrios
Setubal, João Carlos
Henriksen, James R
Zimmerman, Sam
Kopbayeva, Malika
Noyvert, Anna
Iwan, Zana
Kar, Shraman
Nakazawa, Nikita
Meleshko, Dmitry
Horyslavets, Dmytro
Kantsypa, Valeriia
Frolova, Alina
Kahles, Andre
Danko, David
Elhaik, Eran
Labaj, Pawel
Mangul, Serghei
Abdullah, Natasha
Abraao, Marcos
Adel, Ait-hamlat
Afaq, Muhammad
Al-Quaddoomi, Faisal S
Alam, Ireen
Albuquerque, Gabriela E
Alexiev, Alex
Ali, Kalyn
Alvarado-Arnez, Lucia E
Aly, Sarh
Amachee, Jennifer
Amorim, Maria G
Ampadu, Majelia
Amran, Muhammad Al-Fath
An, Nala
Andrew, Watson
Andrianjakarivony, Harilanto
Angelov, Michael
Antelo, Verónica
Aquino, Catharine
Aranguren, Álvaro
Araujo, Luiza F
Arevalo, Hitler Francois Vasquez
Arevalo, Jenny
Arnan, Carme
Arnez, Lucia Elena Alvarado
Arredondo, Fernanda
Arthur, Matthew
Asenjo, Freddy
Aung, Thomas Saw
Auvinet, Juliette
Aventin, Nuria
Ayaz, Sadaf
Baburyan, Silva
Bakere, Abd-Manaaf
Bakhl, Katrin
Bartelli, Thais F
Batdelger, Erdenetsetseg
Baudon, François
Becher, Kevin
Bello, Carla
Benchouaia, Médine
Benisty, Hannah
Benoiston, Anne-Sophie
Benson, Joseph
Benítez, Diego
Bernardes, Juliana
Bertrand, Denis
Beurmann, Silvia
Bhattacharyya, Malay
Bitard-Feildel, Tristan
Bittner, Lucie
Black, Christina
Blanc, Guillaume
Blyther, Brittany
Bode, Toni
Boeri, Julia
Boldgiv, Bazartseren
Bolzli, Kevin
Bordigoni, Alexia
Borrelli, Ciro
Borràs, Sílvia
Bouchard, Sonia
Bouly, Jean-Pierre
Boyd, Alicia
Breschi, Alessandra
Brindefalk, Björn
Brion, Christian
Briones, Alan
Buczansla, Paulina
Burke, Catherine M
Burrell, Aszia
Buttar, Irvind
Bynoe, Jalia
Bönigk, Sven
Bøifot, Kari O
Caballero, Hiram
Cai, Xiao Wen
Calderon, Dayana
Cantillo, Angela
Carbajo, Miguel
Carbone, Alessandra
Cardenas, Anais
Carrillo, Katerine
Casalot, Laurie
Castro, Sofia
Castro, Ana V
Castro, Astred
Castro, Ana Valeria B
Cawthorne, Simone
Cedillo, Jonathan
Centrón, Daniela
Chaker, Salama
Chalangal, Jasna
Chan, Allison
Chasapi, Anastasia I
Chatziefthimiou, Starr
Chaudhuri, Sreya Ray
Chavan, Akash Keluth
Chavez, Francisco
Chem, Gregory
Chen, Xiaoqing
Chen, Michelle
Chen, Jenn-Wei
Chernomoretz, Ariel
Chettouh, Allaeddine
Cheung, Daisy
Chicas, Diana
Chiu, Shirley
Choudhry, Hira
Chrispin, Carl
Ciaramella, Kianna
Cifuentes, Erika
Cohen, Jake
Coil, David A
Collin, Sylvie
Conger, Colleen
Conte, Romain
Corsi, Flavia
Cossio, Cecilia N
Cuebas, Delisia
D’Alessandro, Bruno
Dahlhausen, Katherine E
Darling, Aaron E
Das, Pujita
Davenport, Lucinda B
David, Laurent
Davidson, Natalie R
Dayama, Gargi
Delmas, Stéphane
Deng, Chris K
Dequeker, Chloé
Desert, Alexandre
Devi, Monika
Dezem, Felipe S
Dias-Neto, Emmanuel
Donahoe, Timothy Ryan
Dorado, Sonia
Dorsey, LaShonda
Du, Steven
Dutan, Alexandra
Eady, Naya
Eisen, Jonathan A
Elaskandrany, Miar
Epping, Lennard
Escalera-Antezana, Juan P
Ettinger, Cassie L
Faiz, Iqra
Fan, Luice
Farhat, Nadine
Faure, Emile
Fauzi, Fazlina
Feigin, Charlie
Felice, Skye
Ferreira, Laís Pereira
Figueroa, Gabriel
Fleiss, Aubin
Flores, Denisse
Flores, Jhovana L Velasco
Fonseca, Marcos AS
Foox, Jonathan
Forero, Juan Carlos
Francis, Aaishah
French, Kelly
Fresia, Pablo
Friedman, Jacob
Frolova, Alina
Fuentes, Jaime J
Galipon, Josephine
Garcia, Mathilde
Garcia, Laura
García, Catalina
Geiger, Annie
Gerner, Samuel M
Ghose, Sonia L
Giang, Dao Phuong
Giménez, Matías
Giovannelli, Donato
Githae, Dedan
Gkotzis, Spyridon
Godoy, Liliana
Goldman, Samantha
Gonnet, Gaston H
Gonzalez, Juana
Gonzalez, Andrea
Gonzalez-Poblete, Camila
Gray, Andrew
Gregory, Tranette
Greselle, Charlotte
Guasco, Sophie
Guerra, Juan
Haehr, Wolfgang
Halary, Sebastien
Hartkopf, Felix
Hastings, Jaden JA
Hawkins-Zafarnia, Arya
Hazrin-Chong, Nur Hazlin
Helfrich, Eric
Hell, Eva
Henry, Tamera
Hernandez, Samuel
Hernandez, Pilar Lopez
Hess-Homeier, David
Hittle, Lauren E
Hoan, Nghiem Xuan
Holik, Aliaksei
Homma, Chiaki
Hoxie, Irene
Huber, Michael
Humphries, Elizabeth
Hyland, Stephanie
Hässig, Andrea
Häusler, Roland
Hüsser, Nathalie
III, Robert A Petit
Iderzorig, Badamnyambuu
Igarashi, Mizuki
Iqbal, Shaikh B
Ishikawa, Shino
Ishizuka, Sakura
Islam, Sharah
Islam, Riham
Ito, Kohei
Ito, Sota
Ito, Takayuki
Ivankovic, Tomislav
Iwashiro, Tomoki
Jackson, Sarah
Jacobs, JoAnn
James, Marisano
Jang, Soojin
Jaubert, Marianne
Jerier, Marie-Laure
Jiminez, Esmeralda
Jinfessa, Ayantu
De Jong, Ymke
Joo, Hyun Woo
Jospin, Guilllaume
Kahles, Andre
Kajita, Takema
Kassim, Affifah Saadah Ahmad
Kato, Nao
Kaur, Amrit
Kaur, Inderjit
Kehdy, Fernanda de Souza Gomes
Khadka, Vedbar S
Khan, Shaira
Khavari, Mahshid
Ki, Michelle
Kim, Gina
Kim, Hyung Jun
Kim, Sangwan
King, Ryan J
Knights, Kaymisha
KoLoMonaco, Giuseppe
Koag, Ellen
Kobko-Litskevitch, Nadezhda
Kozhar, Michael
Krebs, Jonas
Kubota, Nanami
Kuklin, Andrii
Kumar, Sheelta S
Kwong, Rachel
Kwong, Lawrence
Lafontaine, Ingrid
Lago, Juliana
Lai, Tsoi Ying
Laine, Elodie
Laiola, Manolo
Lakhneko, Olha
Lamba, Isha
de Lamotte, Gerardo
Lannes, Romain
De Lazzari, Eleonora
Leahy, Madeline
Lee, Hyunjung
Lee, Yunmi
Lee, Lucy
Lemaire, Vincent
Leong, Emily
Leung, Marcus HY
Lewandowska, Dagmara
Li, Chenhao
Liang, Weijun
Lin, Moses
Lisboa, Priscilla
Litskevitch, Anna
Liu, Eric Minwei
Liu, Tracy
Livia, Mayra Arauco
Lo, Yui Him
Losim, Sonia
Loubens, Manon
Lu, Jennifer
Lucaci, Alexander G
Lysakova, Simona
Mahmoud, Salah
Majid, Sara Abdul
Maldonado, Denisse
Mallari, Krizzy
Malta, Tathiane M
Mamun, Maliha
Manoir, Dimitri
Marchandon, German
Marciniak, Natalia
Marinovic, Sonia
Marques, Brunna
Maruyama, Fumito
Mathews, Nicole
Matsuzaki, Yuri
Matthys, Vincent
May, Madelyn
McComb, Elias
Meagher, Annabelle
Melamed, Adiell
Menary, Wayne
Mendez, Katterinne N
Mendez, Ambar
Mendy, Irène Mauricette
Meng, Irene
Menon, Ajay
Menor, Mark
Meoded, Roy
Merino, Nancy
Meydan, Cem
Miah, Karishma
Mignotte, Mathilde
Miketic, Tanja
Miranda, Wilson
Mitsios, Athena
Miura, Ryusei
Miyake, Kunihiko
Moccia, Maria D
Mohan, Natasha
Mohsin, Mohammed
Moitra, Karobi
Moldes, Mauricio
Molina, Laura
Molinet, Jennifer
Molomjamts, Orgil-Erdene
Moniruzzaman, Eftar
Moon, Sookwon
Moraes, Isabelle de Oliveira
Moreno, Mario
Mosella, Maritza S
Moser, Josef W
Mozsary, Christopher
Muehlbauer, Amanda L
Muner, Oasima
Munia, Muntaha
Munim, Naimah
Muscat, Maureen
Mustac, Tatjana
Muñoz, Cristina
Nadalin, Francesca
Naeem, Areeg
Nagy-Szakal, Dorottya
Nakagawa, Mayuko
Narce, Ashanti
Nasu, Masaki
Navarrete, Irene González
Naveed, Hiba
Nazario, Bryan
Nedunuri, Narasimha Rao
Neff, Thomas
Nesimi, Aida
Ng, Wan Chiew
Ng, Synti
Nguyen, Gloria
Ngwa, Elsy
Nicolas, Agier
Nicolas, Pierre
Nika, Abdollahi
Noorzi, Hosna
Nosrati, Avigdor
Noushmehr, Houtan
Nunes, Diana N
Obolenska, Maria
O’Brien, Kathryn
O’Hara, Niamh B
Oken, Gabriella
Olawoyin, Rantimi A
Oliete, Javier Quilez
Olmeda, Kiara
Oluwadare, Tolulope
Oluwadare, Itunu A
Ordioni, Nils
Orpilla, Jenessa
Orrego, Jacqueline
Ortega, Melissa
Osma, Princess
Osuolale, Israel O
Osuolale, Oluwatosin M
Osuolale, Yinka
Ota, Mitsuki
Oteri, Francesco
Oto, Yuya
Ounit, Rachid
Ouzounis, Christos A
Pakrashi, Subhamitra
Paras, Rachel
Pardo-Este, Coral
Park, Young-Ja
Pastuszek, Paulina
Patel, Suraj
Pathmanathan, Jananan
Patrignani, Andrea
Perez, Manuel
Peros, Ante
Persaud, Sabrina
Peters, Anisia
Phillips, Adam
Piekar, María
Pineda, Lisbeth
Plaku, Alma
Plaku, Alketa
Pozdniakova, Sofya
Pompa-Hogan, Brianna
Portilla, María Gabriela
Posada, Leonardo
Priestman, Max
Prithiviraj, Bharath
Priya, Sambhawa
Pugdeethosal, Phanthira
Pugh, Catherine E
Pulatov, Benjamin
Pupiec, Angelika
Qing, Tao
Quiroga, María Paula
Rahiel, Saher
Rahmatulloev, Savlatjon
Rajendran, Kannan
Ramcharan, Aneisa
Ramirez-Rojas, Adan
Rana, Shahryar
Ratnanandan, Prashanthi
Read, Timothy D
Rehrauer, Hubert
Richer, Renee
Rivera, Alexis
Rivera, Michelle
Robertiello, Alessandro
Robinson, Courtney
Rodríguez, Paula
Rodó, Xavier
Rojas, Nayra Aguilar
Roldán, Paul
Rosario, Anyelic
Roth, Sandra
Ruiz, Maria
Ruiz, Stephen Eduard Boja
Russell, Kaitlan
Sabedot, Thais S
Sabina, Mahfuza
Saito, Ikuto
Saito, Yoshitaka
Salas, Gustavo Adolfo Malca
Salazar, Cecilia
San, Kaung Myat
Sanchez, Jorge
Sanchir, Khaliun
Sankar, Ryan
Santos, Paulo Thiago de Souza
Saravi, Zulena
Sasaki, Kai
Sato, Yuma
Sato, Masaki
Sato, Seisuke
Sato, Ryo
Sato, Kaisei
Sayara, Nowshin
Schaaf, Steffen
Schacher, Oli
Schinke, Anna-Lena M
Schlapbach, Ralph
Schori, Christian
Schriml, Jason R
Segato, Felipe
Sepulveda, Felipe
Serpa, Marianna S
De Sessions, Paola F
Severyn, Juan C
Shaaban, Heba
Shakil, Maheen
Shalaby, Sarah
Shari, Aliyah
Shim, Hyenah
Shirahata, Hikaru
Shiwa, Yuh
Siam, Rania
Da Silva, Ophélie
Silva, Jordana M
Simon, Gwenola
Singh, Shaleni K
Sluzek, Kasia
Smith, Rebecca
So, Eunice
Somavilla, Núria Andreu
Sonohara, Yuya
de Sousa, Nuno Rufino
Souza, Camila
Sperry, Jason
Sprinsky, Nicolas
Stark, Stefan G
La Storia, Antonietta
Suganuma, Kiyoshi
Suliman, Hamood
Sullivan, Jill
Supie, Arif Asyraf Md
Suzuki, Chisato
Takagi, Sora
Takahara, Fumie
Takahashi, Naoya
Takahashi, Kou
Takeda, Tomoki
Takenaka, Isabella K
Tanaka, Soma
Tang, Anyi
Tang, Yuk Man
Tarcitano, Emilio
Tassinari, Andrea
Taye, Mahdi
Terrero, Alexis
Thambiraja, Eunice
Thiébaut, Antonin
Thomas, Sade
Thomas, Andrew M
Togashi, Yuto
Togashi, Takumi
Tomaselli, Anna
Tomita, Masaru
Tomita, Itsuki
Tong, Xinzhao
Toth, Oliver
Toussaint, Nora C
Tran, Jennifer M
Truong, Catalina
Tsonev, Stefan I
Tsuda, Kazutoshi
Tsurumaki, Takafumi
Tuz, Michelle
Tymoshenko, Yelyzaveta
Urgiles, Carmen
Usui, Mariko
Vacant, Sophie
Valentine, Brandon
Vann, Laura E
Velter, Fabienne
Ventorino, Valeria
Vera-Wolf, Patricia
Vicedomini, Riccardo
Suarez-Villamil, Michael A
Vincent, Sierra
Vivancos-Koopman, Renee
Wan, Andrew
Wang, Cindy
Warashina, Tomoro
Watanabe, Ayuki
Weekes, Samuel
Werner, Johannes
Westfall, David
Wieler, Lothar H
Williams, Michelle
Wolf, Silver A
Wong, Brian
Wong, Yan Ling
Wong, Tyler
Wright, Rasheena
Wunderlin, Tina
Yamanaka, Ryota
Yang, Jingcheng
Yano, Hirokazu
Yeh, George C
Yemets, Olena
Yeskova, Tetiana
Yoshikawa, Shusei
Zafar, Laraib
Zhang, Yang
Zhang, Shu
Zhang, Amy
Zheng, Yuanting
Mason, Christopher E
Hajirasouliha, Iman
Tierney, Braden
Wei, Wei
Ronkowski, Cynthia
Toscan, Rodolfo Brizola
Turhan, Berk
Toomey, Michael
Andrade-Martínez, Juan Sebastian
Fu, Chenlian
Lucaci, Alexander G
Solano, Arthur Henrique Barrios
Setubal, João Carlos
Henriksen, James R
Zimmerman, Sam
Kopbayeva, Malika
Noyvert, Anna
Iwan, Zana
Kar, Shraman
Nakazawa, Nikita
Meleshko, Dmitry
Horyslavets, Dmytro
Kantsypa, Valeriia
Frolova, Alina
Kahles, Andre
Danko, David
Elhaik, Eran
Labaj, Pawel
Mangul, Serghei
Abdullah, Natasha
Abraao, Marcos
Adel, Ait-hamlat
Afaq, Muhammad
Al-Quaddoomi, Faisal S
Alam, Ireen
Albuquerque, Gabriela E
Alexiev, Alex
Ali, Kalyn
Alvarado-Arnez, Lucia E
Aly, Sarh
Amachee, Jennifer
Amorim, Maria G
Ampadu, Majelia
Amran, Muhammad Al-Fath
An, Nala
Andrew, Watson
Andrianjakarivony, Harilanto
Angelov, Michael
Antelo, Verónica
Aquino, Catharine
Aranguren, Álvaro
Araujo, Luiza F
Arevalo, Hitler Francois Vasquez
Arevalo, Jenny
Arnan, Carme
Arnez, Lucia Elena Alvarado
Arredondo, Fernanda
Arthur, Matthew
Asenjo, Freddy
Aung, Thomas Saw
Auvinet, Juliette
Aventin, Nuria
Ayaz, Sadaf
Baburyan, Silva
Bakere, Abd-Manaaf
Bakhl, Katrin
Bartelli, Thais F
Batdelger, Erdenetsetseg
Baudon, François
Becher, Kevin
Bello, Carla
Benchouaia, Médine
Benisty, Hannah
Benoiston, Anne-Sophie
Benson, Joseph
Benítez, Diego
Bernardes, Juliana
Bertrand, Denis
Beurmann, Silvia
Bhattacharyya, Malay
Bitard-Feildel, Tristan
Bittner, Lucie
Black, Christina
Blanc, Guillaume
Blyther, Brittany
Bode, Toni
Boeri, Julia
Boldgiv, Bazartseren
Bolzli, Kevin
Bordigoni, Alexia
Borrelli, Ciro
Borràs, Sílvia
Bouchard, Sonia
Bouly, Jean-Pierre
Boyd, Alicia
Breschi, Alessandra
Brindefalk, Björn
Brion, Christian
Briones, Alan
Buczansla, Paulina
Burke, Catherine M
Burrell, Aszia
Buttar, Irvind
Bynoe, Jalia
Bönigk, Sven
Bøifot, Kari O
Caballero, Hiram
Cai, Xiao Wen
Calderon, Dayana
Cantillo, Angela
Carbajo, Miguel
Carbone, Alessandra
Cardenas, Anais
Carrillo, Katerine
Casalot, Laurie
Castro, Sofia
Castro, Ana V
Castro, Astred
Castro, Ana Valeria B
Cawthorne, Simone
Cedillo, Jonathan
Centrón, Daniela
Chaker, Salama
Chalangal, Jasna
Chan, Allison
Chasapi, Anastasia I
Chatziefthimiou, Starr
Chaudhuri, Sreya Ray
Chavan, Akash Keluth
Chavez, Francisco
Chem, Gregory
Chen, Xiaoqing
Chen, Michelle
Chen, Jenn-Wei
Chernomoretz, Ariel
Chettouh, Allaeddine
Cheung, Daisy
Chicas, Diana
Chiu, Shirley
Choudhry, Hira
Chrispin, Carl
Ciaramella, Kianna
Cifuentes, Erika
Cohen, Jake
Coil, David A
Collin, Sylvie
Conger, Colleen
Conte, Romain
Corsi, Flavia
Cossio, Cecilia N
Cuebas, Delisia
D’Alessandro, Bruno
Dahlhausen, Katherine E
Darling, Aaron E
Das, Pujita
Davenport, Lucinda B
David, Laurent
Davidson, Natalie R
Dayama, Gargi
Delmas, Stéphane
Deng, Chris K
Dequeker, Chloé
Desert, Alexandre
Devi, Monika
Dezem, Felipe S
Dias-Neto, Emmanuel
Donahoe, Timothy Ryan
Dorado, Sonia
Dorsey, LaShonda
Du, Steven
Dutan, Alexandra
Eady, Naya
Eisen, Jonathan A
Elaskandrany, Miar
Epping, Lennard
Escalera-Antezana, Juan P
Ettinger, Cassie L
Faiz, Iqra
Fan, Luice
Farhat, Nadine
Faure, Emile
Fauzi, Fazlina
Feigin, Charlie
Felice, Skye
Ferreira, Laís Pereira
Figueroa, Gabriel
Fleiss, Aubin
Flores, Denisse
Flores, Jhovana L Velasco
Fonseca, Marcos AS
Foox, Jonathan
Forero, Juan Carlos
Francis, Aaishah
French, Kelly
Fresia, Pablo
Friedman, Jacob
Frolova, Alina
Fuentes, Jaime J
Galipon, Josephine
Garcia, Mathilde
Garcia, Laura
García, Catalina
Geiger, Annie
Gerner, Samuel M
Ghose, Sonia L
Giang, Dao Phuong
Giménez, Matías
Giovannelli, Donato
Githae, Dedan
Gkotzis, Spyridon
Godoy, Liliana
Goldman, Samantha
Gonnet, Gaston H
Gonzalez, Juana
Gonzalez, Andrea
Gonzalez-Poblete, Camila
Gray, Andrew
Gregory, Tranette
Greselle, Charlotte
Guasco, Sophie
Guerra, Juan
Haehr, Wolfgang
Halary, Sebastien
Hartkopf, Felix
Hastings, Jaden JA
Hawkins-Zafarnia, Arya
Hazrin-Chong, Nur Hazlin
Helfrich, Eric
Hell, Eva
Henry, Tamera
Hernandez, Samuel
Hernandez, Pilar Lopez
Hess-Homeier, David
Hittle, Lauren E
Hoan, Nghiem Xuan
Holik, Aliaksei
Homma, Chiaki
Hoxie, Irene
Huber, Michael
Humphries, Elizabeth
Hyland, Stephanie
Hässig, Andrea
Häusler, Roland
Hüsser, Nathalie
III, Robert A Petit
Iderzorig, Badamnyambuu
Igarashi, Mizuki
Iqbal, Shaikh B
Ishikawa, Shino
Ishizuka, Sakura
Islam, Sharah
Islam, Riham
Ito, Kohei
Ito, Sota
Ito, Takayuki
Ivankovic, Tomislav
Iwashiro, Tomoki
Jackson, Sarah
Jacobs, JoAnn
James, Marisano
Jang, Soojin
Jaubert, Marianne
Jerier, Marie-Laure
Jiminez, Esmeralda
Jinfessa, Ayantu
De Jong, Ymke
Joo, Hyun Woo
Jospin, Guilllaume
Kahles, Andre
Kajita, Takema
Kassim, Affifah Saadah Ahmad
Kato, Nao
Kaur, Amrit
Kaur, Inderjit
Kehdy, Fernanda de Souza Gomes
Khadka, Vedbar S
Khan, Shaira
Khavari, Mahshid
Ki, Michelle
Kim, Gina
Kim, Hyung Jun
Kim, Sangwan
King, Ryan J
Knights, Kaymisha
KoLoMonaco, Giuseppe
Koag, Ellen
Kobko-Litskevitch, Nadezhda
Kozhar, Michael
Krebs, Jonas
Kubota, Nanami
Kuklin, Andrii
Kumar, Sheelta S
Kwong, Rachel
Kwong, Lawrence
Lafontaine, Ingrid
Lago, Juliana
Lai, Tsoi Ying
Laine, Elodie
Laiola, Manolo
Lakhneko, Olha
Lamba, Isha
de Lamotte, Gerardo
Lannes, Romain
De Lazzari, Eleonora
Leahy, Madeline
Lee, Hyunjung
Lee, Yunmi
Lee, Lucy
Lemaire, Vincent
Leong, Emily
Leung, Marcus HY
Lewandowska, Dagmara
Li, Chenhao
Liang, Weijun
Lin, Moses
Lisboa, Priscilla
Litskevitch, Anna
Liu, Eric Minwei
Liu, Tracy
Livia, Mayra Arauco
Lo, Yui Him
Losim, Sonia
Loubens, Manon
Lu, Jennifer
Lucaci, Alexander G
Lysakova, Simona
Mahmoud, Salah
Majid, Sara Abdul
Maldonado, Denisse
Mallari, Krizzy
Malta, Tathiane M
Mamun, Maliha
Manoir, Dimitri
Marchandon, German
Marciniak, Natalia
Marinovic, Sonia
Marques, Brunna
Maruyama, Fumito
Mathews, Nicole
Matsuzaki, Yuri
Matthys, Vincent
May, Madelyn
McComb, Elias
Meagher, Annabelle
Melamed, Adiell
Menary, Wayne
Mendez, Katterinne N
Mendez, Ambar
Mendy, Irène Mauricette
Meng, Irene
Menon, Ajay
Menor, Mark
Meoded, Roy
Merino, Nancy
Meydan, Cem
Miah, Karishma
Mignotte, Mathilde
Miketic, Tanja
Miranda, Wilson
Mitsios, Athena
Miura, Ryusei
Miyake, Kunihiko
Moccia, Maria D
Mohan, Natasha
Mohsin, Mohammed
Moitra, Karobi
Moldes, Mauricio
Molina, Laura
Molinet, Jennifer
Molomjamts, Orgil-Erdene
Moniruzzaman, Eftar
Moon, Sookwon
Moraes, Isabelle de Oliveira
Moreno, Mario
Mosella, Maritza S
Moser, Josef W
Mozsary, Christopher
Muehlbauer, Amanda L
Muner, Oasima
Munia, Muntaha
Munim, Naimah
Muscat, Maureen
Mustac, Tatjana
Muñoz, Cristina
Nadalin, Francesca
Naeem, Areeg
Nagy-Szakal, Dorottya
Nakagawa, Mayuko
Narce, Ashanti
Nasu, Masaki
Navarrete, Irene González
Naveed, Hiba
Nazario, Bryan
Nedunuri, Narasimha Rao
Neff, Thomas
Nesimi, Aida
Ng, Wan Chiew
Ng, Synti
Nguyen, Gloria
Ngwa, Elsy
Nicolas, Agier
Nicolas, Pierre
Nika, Abdollahi
Noorzi, Hosna
Nosrati, Avigdor
Noushmehr, Houtan
Nunes, Diana N
Obolenska, Maria
O’Brien, Kathryn
O’Hara, Niamh B
Oken, Gabriella
Olawoyin, Rantimi A
Oliete, Javier Quilez
Olmeda, Kiara
Oluwadare, Tolulope
Oluwadare, Itunu A
Ordioni, Nils
Orpilla, Jenessa
Orrego, Jacqueline
Ortega, Melissa
Osma, Princess
Osuolale, Israel O
Osuolale, Oluwatosin M
Osuolale, Yinka
Ota, Mitsuki
Oteri, Francesco
Oto, Yuya
Ounit, Rachid
Ouzounis, Christos A
Pakrashi, Subhamitra
Paras, Rachel
Pardo-Este, Coral
Park, Young-Ja
Pastuszek, Paulina
Patel, Suraj
Pathmanathan, Jananan
Patrignani, Andrea
Perez, Manuel
Peros, Ante
Persaud, Sabrina
Peters, Anisia
Phillips, Adam
Piekar, María
Pineda, Lisbeth
Plaku, Alma
Plaku, Alketa
Pozdniakova, Sofya
Pompa-Hogan, Brianna
Portilla, María Gabriela
Posada, Leonardo
Priestman, Max
Prithiviraj, Bharath
Priya, Sambhawa
Pugdeethosal, Phanthira
Pugh, Catherine E
Pulatov, Benjamin
Pupiec, Angelika
Qing, Tao
Quiroga, María Paula
Rahiel, Saher
Rahmatulloev, Savlatjon
Rajendran, Kannan
Ramcharan, Aneisa
Ramirez-Rojas, Adan
Rana, Shahryar
Ratnanandan, Prashanthi
Read, Timothy D
Rehrauer, Hubert
Richer, Renee
Rivera, Alexis
Rivera, Michelle
Robertiello, Alessandro
Robinson, Courtney
Rodríguez, Paula
Rodó, Xavier
Rojas, Nayra Aguilar
Roldán, Paul
Rosario, Anyelic
Roth, Sandra
Ruiz, Maria
Ruiz, Stephen Eduard Boja
Russell, Kaitlan
Sabedot, Thais S
Sabina, Mahfuza
Saito, Ikuto
Saito, Yoshitaka
Salas, Gustavo Adolfo Malca
Salazar, Cecilia
San, Kaung Myat
Sanchez, Jorge
Sanchir, Khaliun
Sankar, Ryan
Santos, Paulo Thiago de Souza
Saravi, Zulena
Sasaki, Kai
Sato, Yuma
Sato, Masaki
Sato, Seisuke
Sato, Ryo
Sato, Kaisei
Sayara, Nowshin
Schaaf, Steffen
Schacher, Oli
Schinke, Anna-Lena M
Schlapbach, Ralph
Schori, Christian
Schriml, Jason R
Segato, Felipe
Sepulveda, Felipe
Serpa, Marianna S
De Sessions, Paola F
Severyn, Juan C
Shaaban, Heba
Shakil, Maheen
Shalaby, Sarah
Shari, Aliyah
Shim, Hyenah
Shirahata, Hikaru
Shiwa, Yuh
Siam, Rania
Da Silva, Ophélie
Silva, Jordana M
Simon, Gwenola
Singh, Shaleni K
Sluzek, Kasia
Smith, Rebecca
So, Eunice
Somavilla, Núria Andreu
Sonohara, Yuya
de Sousa, Nuno Rufino
Souza, Camila
Sperry, Jason
Sprinsky, Nicolas
Stark, Stefan G
La Storia, Antonietta
Suganuma, Kiyoshi
Suliman, Hamood
Sullivan, Jill
Supie, Arif Asyraf Md
Suzuki, Chisato
Takagi, Sora
Takahara, Fumie
Takahashi, Naoya
Takahashi, Kou
Takeda, Tomoki
Takenaka, Isabella K
Tanaka, Soma
Tang, Anyi
Tang, Yuk Man
Tarcitano, Emilio
Tassinari, Andrea
Taye, Mahdi
Terrero, Alexis
Thambiraja, Eunice
Thiébaut, Antonin
Thomas, Sade
Thomas, Andrew M
Togashi, Yuto
Togashi, Takumi
Tomaselli, Anna
Tomita, Masaru
Tomita, Itsuki
Tong, Xinzhao
Toth, Oliver
Toussaint, Nora C
Tran, Jennifer M
Truong, Catalina
Tsonev, Stefan I
Tsuda, Kazutoshi
Tsurumaki, Takafumi
Tuz, Michelle
Tymoshenko, Yelyzaveta
Urgiles, Carmen
Usui, Mariko
Vacant, Sophie
Valentine, Brandon
Vann, Laura E
Velter, Fabienne
Ventorino, Valeria
Vera-Wolf, Patricia
Vicedomini, Riccardo
Suarez-Villamil, Michael A
Vincent, Sierra
Vivancos-Koopman, Renee
Wan, Andrew
Wang, Cindy
Warashina, Tomoro
Watanabe, Ayuki
Weekes, Samuel
Werner, Johannes
Westfall, David
Wieler, Lothar H
Williams, Michelle
Wolf, Silver A
Wong, Brian
Wong, Yan Ling
Wong, Tyler
Wright, Rasheena
Wunderlin, Tina
Yamanaka, Ryota
Yang, Jingcheng
Yano, Hirokazu
Yeh, George C
Yemets, Olena
Yeskova, Tetiana
Yoshikawa, Shusei
Zafar, Laraib
Zhang, Yang
Zhang, Shu
Zhang, Amy
Zheng, Yuanting
Mason, Christopher E
Hajirasouliha, Iman
Supervisor
Department
Computational Biology
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Type
Journal article
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Language
English
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Abstract
Computational analysis of large-scale metagenomics sequencing datasets provides valuable isolate-level taxonomic and functional insights from complex microbial communities. However, the ever-expanding ecosystem of metagenomics-specific methods and file formats makes designing scalable workflows and seamlessly exploring output data increasingly challenging. Although one-click bioinformatics pipelines can help organize these tools into workflows, they face compatibility and maintainability challenges that can prevent replication. To address the gap in easily extensible yet robustly distributable metagenomics workflows, we have developed the Core Analysis Modular Pipeline (CAMP), a module-based metagenomics analysis system written in Snakemake, with a standardized module and directory architecture. Each module can run independently or in sequence to produce target data formats (e.g. short-read preprocessing alone or followed by <i>de novo</i> assembly), and provides output summary statistics reports and Jupyter notebook-based visualizations. We applied CAMP to a set of 10 metagenomics samples, demonstrating how a modular analysis system with built-in data visualization facilitates rich seamless communication between outputs from different analytical purposes. The CAMP ecosystem (module template and analysis modules) can be found at https://github.com/Meta-CAMP.
Citation
L. Mak, B. Tierney, W. Wei, C. Ronkowski, R.B. Toscan, B. Turhan , et al., "CAMP: a modular metagenomics analysis system for integrated multistep data exploration," NAR Genomics and Bioinformatics, vol. 8, no. 1, pp. lqaf172-lqaf172, 2026, https://doi.org/10.1093/nargab/lqaf172.
Source
NAR Genomics and Bioinformatics
Conference
Keywords
31 Biological Sciences, 3102 Bioinformatics and Computational Biology, Computational Biology, Metagenomics, Microbiota, Software, Workflow
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Source
Publisher
Oxford University Press